Integrative and Comparative Biology Advance Access originally published online on August 5, 2008
Integrative and Comparative Biology 2008 48(5):658-667; doi:10.1093/icb/icn081
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Anterior-posterior patterning and segmentation of the vertebrate head
Developmental and Cell Biology, University of California, Irvine, Irvine, CA 92697-2300, USA
Correspondence: 1E-mail: tschilli{at}uci.edu
| Synopsis |
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Segmentation of the vertebrate head emerges out of earlier processes that establish the anterior-posterior (A-P) axis. Recent genetic studies and comparisons across species have led to a better understanding of the links between A-P patterning and segmentation. These point to similar signals acting on both head and trunk, such as retinoic acid and fibroblast growth factors. These form interacting networks of diffusible morphogen gradients that pattern both hindbrain rhombomeres and mesodermal somites. New computational models, particularly for retinoic acid, have revealed how morphogen gradients are established and made robust to changes in signaling levels. However, the orientations of these gradients, as well as how they interact to generate segments, differ remarkably between germ layers and body regions. Thus, the vertebrate head is, in part, built through modifications of the same processes that link A-P patterning and segmentation in the trunk, but fundamental differences in how these processes are deployed lend further doubt to the notion that head and trunk segments are homologous.
| Introduction |
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The idea that the vertebrate head is fundamentally segmented dates back to the early 19th century with the vertebral theories of Goethe (1820
One main reason for a renewed interest in head segmentation has come from studies on the embryonic hindbrain (Lumsden and Keynes 1989
; Fraser et al. 1990
; Trevarrow et al. 1990
; reviewed by Moens and Prince 2002
; Lumsden 2004
). These have provided clear evidence for a rhombomeric organization underlying the pattern of cranial nerves, which correlates with the migratory pathways of cranial neural-crest cells that contribute to the pharyngeal arches. In contrast, the spinal cord does not display an obvious, intrinsic, early segmental patterning. Rather, spinal nerve segmentation is dictated by surrounding somites (Keynes and Stern 1984
; Eisen and Pike 1991
; Ensini et al. 1998
). Molecular developmental biology has shown segmental patterns of gene expression in rhombomeres and arches, and requirements for Hox genes in both sets of structures, but these have failed to resolve the issue of the basic segmental plan underlying the organization of the vertebrate head (reviewed by Schilling and Knight 2001
). At least two fundamental questions remain: (1) how are A-P patterning and segmentation linked and (2) how do these mechanisms differ between germ layers (i.e., ectoderm and mesoderm) and body regions (i.e., head and trunk)?
| A-P patterning of head segments |
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In vertebrates, regional induction of cell fates along the A-P axis is perhaps best understood for the neural plate. Tissue derived from the dorsal mesoderm of Spemann's organizer in amphibians induces neural identity and also regionally specifies neural tissue as future brain or spinal cord (Mangold 1933
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Rhombomere identities are determined, at least in part, by a combinatorial code of trancription factors such as the Hox genes (Fig. 1; reviewed by Moens and Prince 2002
Rhombomeric segmentation is also closely tied to the segmental formation and migration of cranial neural-crest cells that contribute to the pharyngeal arches (Fig. 1B). These migrate in three major streams, each with a distinct rhombomeric origin (stream 1, r2–3; stream 2, r4–5; stream 3, r6–7). Transplantations of rhombomeres along the A-P axis in avian embryos, grafted together with adjacent neural-crest cells bound for one of the three streams, lead to arch transformations in which the segmental fates of surrounding tissues are reorganized according to the identities of the transplanted/donor cells (Noden 1983
; reviewed by Noden and Trainor, 2005
). This has led to the notion that, unlike the trunk in which primary segmentation occurs in the mesodermal somites, head segments are established first in the ectoderm (e.g., hindbrain and neural crest) and secondarily imposed on surrounding mesoderm. Both require RA and Hox genes for proper segmentation and this is thought to coordinate the cranial nerves derived from individual rhombomeres with structures that they innervate within the arches. Because reducing RA signaling leads to expansion of anterior rhombomeres and arches and to loss of posterior ones (Fig. 1C; Niederreither 2000
; Begemann et al. 2001
; Dupe and Lumsden 2001
), the simplest interpretation of these results is that an early gradient of RA coordinates head segments through its roles in patterning the early neural ectoderm.
| RA and the morphogen model |
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Recently, however, the role of RA as a graded morphogen in this system has been under intense debate, particularly in relation to the hindbrain. RA has long been known to specify posterior rhombomere identities, and to regulate many segment-specific target genes directly, including Hox genes. RA is not produced in the neuroepithelium, but is generated by Raldh2 in paraxial mesoderm in the trunk, and degraded by the cytochrome p450 enzyme Cyp26 (retinoic acid-4-hydroxylase) in the anterior neural plate (Fig. 2A) (Niederreither et al. 1997; Swindell et al. 1999
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Support for this model came first from treatments of amphibian and avian embryos with exogenous RA, which causes posterior rhombomeres to expand, apparently at the expense of anterior segments, in a concentration-dependent manner (Durston et al. 1989
Arguments against the morphogen model have centered around the time-dependent aspects of the formation of rhombomeres. Rhombomeres, like somites, form more or less in an anterior to posterior sequence. Length of exposure to the RA signal may be just as important as its concentration. Timing could be regulated by precise patterns of synthesis and degradation. Consistent with this idea, three Cyp26 enzymes (Cyp26a1, Cyp26b1, and Cyp26c1) are dynamically expressed in the prospective hindbrain and are required for segmentation of the hindbrain (Swindell et al. 1999
; Abu-Abed et al. 2001
; Sakai et al. 2001
; Emoto et al. 2005
; Sirbu et al. 2005
; Hernandez et al. 2007
). Recent studies have argued that "shifting boundaries" of degradation, rather than a gradient of RA, determine the pattern of rhombomeres (Fig. 2B and D). In these models, RA signaling initially extends up to the rhombomere 2/3 (r2/3) boundary, but later becomes restricted posteriorly to the r4/5 boundary due to degradation by Cyp26b1 and Cyp26c1. Posterior rhombomeres are specified by a longer exposure to RA than are more anterior segments, rather than by the concentration of RA.
None of these studies, however, can rule out a concentration-dependent role for RA. Concentration dependence is still the best explanation for the graded expansion or contraction of rhombomeres along the A-P axis with disruptions of RA signaling and for the responses of certain RA-dependent genes (i.e., hoxb1 and vHNF1; Sirbu et al. 2005
). Zebrafish or mouse embryos lacking Cyp26c1 also do not show hindbrain defects, arguing against the later steps of degradation in these models (Uehara et al. 2006
; Hernandez et al. 2007
).
Simple timing of exposure to the RA signal also seems unlikely to play a major role in segmentation of the hindbrain. While Hox genes expressed in the posterior hindbrain are normally expressed later than are more anteriorly-expressed genes, their expression can be induced at earlier stages in zebrafish embryos with high concentrations of RA (Maves and Kimmel 2005
). Thus, the thresholds needed to activate posteriorly-expressed genes may only be achieved at later stages, as the RA gradient grows with time, giving the appearance of a time-dependence where it does not exist (Fig. 2C).
If the spatial and temporal activities of RA are controlled by shifting boundaries of Cyp26-mediated degradation, some other A-P patterning information must control the expression of Cyp26 (Sirbu et al. 2005
; Hernandez et al. 2007
). Hernandez et al. (2007
) argued that RA acts permissively, rather than instructively, in hindbrain segmentation and against a gradient model. They base this in part on the phenotypes of Cyp26-deficient zebrafish. Depletion of Cyp26b1 and Cyp26c1 in a Cyp26a1–/–-mutant embryo leads to much more severe posteriorization than does loss of Cyp26a1 alone. However, the argument is also based on the curious fact that exogenous RA, applied uniformly to embryos (fish, frog, bird, or mammal) in an unlocalized manner, can rescue hindbrain defects in an RA-deficient animal. This argues strongly for a permissive role.
Two aspects of the RA signaling pathway, however, have not been taken into account in these models: (1) positive and negative feedback by various RA-induced components within the pathway and (2) their regulation by other signals, such as Fgf and Wnt. We have recently incorporated experiments addressing both of these components into a more computational, systems-level approach to RA signaling in the hindbrain of the zebrafish (Fig. 2E; White et al. 2007
). This has led to yet another version of the gradient model, but one that we think can reconcile many features of the models discussed above.
We found that, in contrast to many previous studies, zebrafish cyp26a1 is expressed at low levels within the prospective hindbrain itself during gastrulation, rather than being restricted to presumptive forebrain and midbrain (Fig. 3; White et al. 2007
). In addition, we showed that this low-level expression in the hindbrain is RA-dependent. RA induces Cyp26a1 expression, forming a negative feedback loop through inducible degradation that could play major roles in shaping the RA-signaling gradient. Thus, Cyp26 enzymes may not simply act as RA sinks wherever they are expressed, but rather act dynamically to modulate signaling gradients locally and compensate for fluctuations in RA levels. This makes sense for a signal derived from a dietary precursor (vitamin A) that may vary dramatically in its availability to the embryo.
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In contrast, Cyp26a1 expression (and induction by RA) is inhibited by other posteriorizing signals, such as Fgfs (Kudoh et al. 2002
For instance, previous studies suggested that the RA gradient grows with time, possibly through a gradual increase in RA synthesis (Maves and Kimmel 2005
). However, our model points instead to growth of the gradient through a gradual reduction in degradation as inhibition of Cyp26a1 by Fgf decreases during embryonic growth (Fig. 3A). This also seems preferable to a system dependent on precise control of RA synthesis from varying levels of dietary vitamin A. Instead, the RA gradient is tightly coupled to the less environmentally labile Fgf gradient. Our model also provides a very interesting resolution to the dilemma of why exogenous RA, applied uniformly, rescues an RA-deficient embryo (Hernandez et al. 2007
). The key is regulated degradation. By having RA induce and Fgf inhibit Cyp26a1 expression, uniform RA is rapidly converted into an intracellular concentration gradient (Fig. 3B).
It is important, however, to note that so far our model has only considered interrelationships between RA and Fgf signaling at early stages of gastrulation, when the synthesis of RA in trunk mesoderm and degradation by Cyp26a1 are only separated by a short distance (100–150 micrometers in zebrafish). Wnt signaling also inhibits Cyp26a1 expression at these early stages and may act upstream to regulate competence to respond to RA and Fgf (Kudoh et al. 2002
). In addition, a complex hierarchy of inter-rhombomeric interactions exists in the hindbrain by the end of gastrulation. For example, Fgfs (e.g., Fgf8) are expressed at the midbrain-hindbrain boundary and in r4, where in zebrafish they are required for patterning neighboring segments (Maves et al. 2002
). Cyp26b1 and Cyp26c1 are expressed in different subsets of rhombomeres, in species-specific patterns, where they very likely protect cells from excess RA (Swindell et al. 1999
; Sirbu et al. 2005
; Hernandez et al. 2007
). These may have important roles in modulating the later influences of RA on neurogenesis in the hindbrain, and this is an important topic for future research.
| A reversal of the orientation of morphogen gradients in the head and trunk |
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While the hindbrain subdivides into rhombomeres, the spinal cord remains unsegmented. However, both are patterned along the A-P axis by Hox genes. Fgf and RA also influence Hox gene expression and neurogenesis in the prospective spinal cord, as well as segmentation of the paraxial mesoderm into somites, suggesting that common signals control A-P patterning in head and trunk. Unlike the hindbrain, however, the gradients of RA and Fgf oppose one another in the trunk after gastrulation, with RA levels highest in the most anterior somites and Fgfs highest posteriorly (Fig. 4). This difference in the spatial deployment of at least one morphogen, RA, suggests a fundamental difference in the mechanisms by which these signals establish segmentation in the head and trunk.
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Are apparent differences in A-P patterning between hindbrain and spinal cord due to some intrinsic difference in their ability to respond to the same signals? Two recent studies in zebrafish have shown that the spinal cord is competent to acquire a hindbrain identity.
Competence is under the control of the Cdx genes, homeobox-containing members of the ParaHox clusters, closely related to Drosophila caudal. Cdx genes suppress anterior development and promote posterior development both in vertebrates and invertebrates (Lohnes 2003; Deschamps and van Nes 2005). In mice, Cdx genes help integrate RA, Fgf and Wnt signals to regulate patterns of Hox expression in the paraxial mesoderm. Cdx proteins bind to cis-regulatory elements of posterior hox genes and directly activate their transcription (Subramanian et al. 1995
; Pownall et al. 1996
; Charite et al. 1998
; Isaacs et al. 1998
). cdx4-/--mutant zebrafish have reductions in posterior hox gene expression (Davidson et al. 2003
; Hammerschmidt et al. 1996) and combined depletion of cdx4 and cdx1a causes loss of hoxb7a and hoxb9a expression and severe posterior truncations (Davidson and Zon 2006
; Shimizu et al. 2005).
Surprisingly, loss of Cdx function in these experiments on zebrafish also leads to ectopic hindbrain tissue in the spinal cord (Fig. 4; Shimizu et al. 2006
; Skromne et al. 2007
). Numerous hindbrain-specific hox genes, as well as differentiated branchiomotor neurons, are detected in the trunks and tails of Cdx-deficient embryos. Furthermore, genes marking different rhombomeres are spatially localized within this ectopic hindbrain tissue in a reversed orientation; anterior markers such as hoxb4 are expressed further posteriorly than is hoxb6 (Fig. 4B). The authors interpret this to mean that the Cdx genes control the responsiveness of spinal-cord cells to RA, and that RA gradients are reversed between the hindbrain and spinal cord, with the pivot point occurring somewhere around the level of the third somite. These studies also demonstrate that, at least within the neural ectoderm, cells are competent to acquire hindbrain fates and possibly to become organized into rhombomeres all along the A-P axis.
Consistent with the hypothesis that Cdx genes modulate the responses of cells to posteriorizing signals, ectopic hindbrain tissue in Cdx-deficient embryos is suppressed by inhibiting RA or Fgf (Shimizu et al. 2006
; Skromne et al. 2007
) (Fig. 4C–E). Embryos deficient for both Cdx1a/4 and Fgf signaling still form mirror-image duplicates of hindbrain tissue in the spinal cord, but these duplicates only retain markers of more posterior rhombomeres and appear to lack r4-6 (Fig. 4C). Likewise, Cdx-deficient embryos with severely reduced RA signaling only show duplications of r4 and r5 (Fig. 4D). Without either RA or Fgf signaling, Cdx-deficient embryos fail to form any duplicate tissue and lack posterior rhombomeres altogether (Fig. 4E).
Cdx-Hox functions also permit both RA and Fgf signaling pathways to operate. They are required autonomously (within the cells that express them) for Hox expression, and restoration of Hox expression in Cdx-deficient zebrafish embryos can at least partially rescue Krox20 expression (Shimizu et al. 2006
). Like Fgfs, Cdx proteins are also negative regulators of Cyp26a1 (Wingert et al. 2007
). In addition, Cdx transcription factors regulate, to some extent, the formation of the mesodermal sources of RA and Fgfs. For example, Raldh2 expression in the paraxial mesoderm shifts posteriorly in Cdx-deficient embryos, possibly altering the spatial relationships between RA and Fgf gradients such that both are high posteriorly.
| Mesodermal segmentation |
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Strikingly, the same mirror-image reversal in the orientation of the RA gradient between the head and trunk is also a crucial feature of recent models of somite formation and segmentation of the paraxial mesoderm in the trunk and tail (Fig. 5). Somites and their derivatives (e.g., vertebrae, axial muscles) are the most clearly segmented portions of the vertebrate body. Somite formation depends on a "clock and wavefront" mechanism involving oscillating patterns of gene expression that move progressively toward the posterior end. An oscillating signal combines with a moving wavefront from anterior to posterior that sets the boundaries of somites within the presomitic mesoderm. A working model at the molecular level suggests that the clock involves Notch signaling, the wavefront involves RA and Fgf signaling, and the two are interconnected through cycles of Wnt signaling (Palmeirim et al. 1997
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At first glance, many of the signals involved are the same. However, unlike the hindbrain, RA and Fgf in the presomitic mesoderm are thought to form opposing gradients, with RA highest anteriorly and Fgf posteriorly (Fig. 5; Goldbeter et al. 2007
All of this new information on the mechanisms of mesodermal segmentation in the trunk also has important implications for understanding the relationship between head and trunk segmentation. Comparative embryologists have long wondered if the equivalent of mesodermal somites and their segmental derivatives extend into the cranial region (Goethe 1820
; Balfour 1876; Kuratani and Schilling 2008
). We can now ask if similar cycles of gene expression extend into the cranial mesoderm. For the best-studied elements of this system, such as Hairy, Lunatic fringe, and other components of Notch signaling, the answer appears to be "no" (Fig. 5). If any cycling occurs in presumptive head mesoderm, it occurs during gastrulation, prior to formation of the first somite. Only two pulses of Hairy or Lfng expression have been observed in avian embryos at these early stages, which are insufficient to account for the full set of head segments (Jouve et al. 2002
). Head segments may form independently of the segmentation clock or a similar clock may act through a distinct set of cycling genes.
Cranial mesoderm also shows no obvious morphological signs of segmentation. As discussed extensively at our symposium, a lack of any molecular evidence for reiterated patterning within this tissue has led most researchers to the conclusion that cranial "somitomeres" do not exist (Kuratani and Schilling 2008
). Instead, cranial mesoderm appears to become secondarily segmented within the pharyngeal arches through influences from surrounding neural crest and endoderm (Noden and Trainor 2005
). Thus, consistent with the "new head" hypothesis (Northcutt 2008
), the cranial mesoderm does not appear to be built simply through modifications of the same processes that pattern segments in the trunk (i.e., somites).
| Conclusions and perspectives—evolution of systems of A-P patterning |
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Given all of this new information, how do we envisage the link between A-P patterning and head segmentation and how do these mechanisms differ between germ layers and body regions? One major take-home message of this work, and of the entire Head Segmentation symposium at the SICB Meeting in January 2008, is that it seems unlikely that a single global patterning system controls all types of segments. Ectoderm differs in fundamental ways from mesoderm, and both germ layers become segmented quite differently in the head, compared with more posterior body regions. Part of this difference appears to lie in the links between early A-P patterning and the formation of segments.
In the cranial region, most of the evidence points to a primary role for the ectoderm, including the hindbrain and neural crest, in establishing segments. These seem to impart patterning on an otherwise unsegmented mesoderm during formation of the pharyngeal arches. Pharyngeal endoderm also segments into a series of pouches, which form the boundaries between adjacent arches, and less is known about the mechanisms that underlie pouch formation. Pouches do form in the absence of cranial neural crest (Veitch et al. 1999
) but also require interactions with adjacent mesoderm and with both RA and Fgf signaling. Cdx genes also specify a posterior domain within the endoderm that alters its responsiveness to RA signaling, similar to their roles in the nervous system (Kinkel et al. 2008
). Future studies are needed to determine how segmentation in the endodermal germ layer is coordinated with that of other germ layers, and whether or not the endoderm is subjected to similar morphogen gradients during its early development.
Much of the distinction between mechanisms of A-P patterning in the head and trunk centers around the role of RA. This is interesting from a comparative perspective, since RA seems to have acquired roles in A-P patterning in deuterostomes (Schilling and Knight 2001
). Protostomes (e.g., nematodes and arthropods) lack both RARs and the enzymes that synthesize RA (Marletaz et al. 2006
). In contrast, Retinoid X receptors (RXRs) and cytochrome p450 enzymes similar to Cyp26s are found throughout the animal kingdom (Niwa et al. 2004
; Szanto et al. 2004
; Bogwitz et al. 2005
; King-Jones et al. 2006
). Our model for regulation of the degradation of RA in the hindbrain suggests that an RA gradient system could have evolved simply by bringing one of these degrading enzymes under the control of an ancestral A-P patterning system, so that its expression in embryos became graded from posterior to anterior. This would automatically form a gradient of any substrate creating a primitive RA-like gradient system that could later be refined by localizing the storage and synthesis of precursors. Gradients of nuclear hormone–receptor ligands, together with the feedback loops discussed here, may have distinct advantages for forming sharp boundaries such as those between hindbrain rhombomeres or mesodermal somites (Kerszberg 1996
). Likewise, the ability to evolve gradients readily through changes in localized degradation could help explain many of the perceived differences between the head and trunk segments of vertebrates.
| Footnotes |
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From the symposium "Vertebrate Head Segmentation in a Modern Evo-Devo Context" presented at the annual meeting of the Society for Integrative and Comparative Biology, January 2–6, 2008, at San Antonio, Texas.
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